2ZVI	Isomerase	date	Nov 07, 2008
title	Crystal Structure Of 2,3-Diketo-5-Methylthiopentyl-1-Phospha From Bacillus Subtilis
authors	H.Tamura, T.Yadani, Y.Kai, T.Inoue, H.Matsumura
compound		source
Molecule: 2,3-Diketo-5-Methylthiopentyl-1-Phosphate Enolase Chain: A, B, C, D Fragment: Residues 10-414 Synonym: Dk-Mtp-1-P Enolase Ec: 5.3.2.- Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.334 91.466 106.967 90.00 90.82 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand		enzyme	Isomerase E.C.5.3.2 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis., Tamura H, Saito Y, Ashida H, Kai Y, Inoue T, Yokota A, Matsumura H, Acta Crystallogr D Biol Crystallogr. 2009 Sep;65(Pt 9):942-51. Epub 2009, Aug 14. PMID:19690372

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk] Biological Unit Coordinates (2zvi.pdb1.gz) 124 Kb Biological Unit Coordinates (2zvi.pdb2.gz) 120 Kb CSU: Contacts of Structural Units for 2ZVI Structure Factors (527 Kb) Retrieve 2ZVI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZVI from S2C, [Save to disk] Re-refined 2zvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZVI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZVI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZVI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zvi_A] [2zvi] [2zvi_D] [2zvi_C] [2zvi_B] SWISS-PROT database: [O31666] Domain organization of [MTNW_BACSU] by SWISSPFAM

Other resources with information on 2ZVI

Community annotation for 2ZVI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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