2ZVJ Transferase date Nov 07, 2008
title Crystal Structures Of Rat Catechol-O-Methyltransferase Compl Coumarine-Based Inhibitor
authors E.Tsuji
compound source
Molecule: Catechol O-Methyltransferase
Chain: A
Fragment: Unp Residues 44-264
Ec: 2.1.1.6
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon Plus(De3)Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 32 2 1
R_factor 0.211 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.448 50.448 167.626 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand KOM, MG, SAM enzyme Transferase E.C.2.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of rat catechol-O-methyltransferase complexed with coumarine-based inhibitor., Tsuji E, Okazaki K, Takeda K, Biochem Biophys Res Commun. 2009 Jan 16;378(3):494-7. Epub 2008 Dec 3. PMID:19056347
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2zvj.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2ZVJ
  • CSU: Contacts of Structural Units for 2ZVJ
  • Likely Quarternary Molecular Structure file(s) for 2ZVJ
  • Structure Factors (82 Kb)
  • Retrieve 2ZVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZVJ from S2C, [Save to disk]
  • Re-refined 2zvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZVJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zvj_A] [2zvj]
  • SWISS-PROT database: [P22734]
  • Domain organization of [COMT_RAT] by SWISSPFAM
  • Other resources with information on 2ZVJ
  • Community annotation for 2ZVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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