2ZVL Transferase date Nov 11, 2008
title Crystal Structure Of Pcna In Complex With Dna Polymerase Kap Fragment
authors A.Hishiki, H.Hashimoto, T.Hanafusa, K.Kamei, E.Ohashi, T.Shimizu, M.Sato
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B, C, D, E, F
Synonym: Pcna, Cyclin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7

Molecule: Dna Polymerase Kappa
Chain: U, V, W, X, Y, Z
Ec: 2.7.7.7
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized Peptide
symmetry Space Group: P 1
R_factor 0.225 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.769 74.707 109.049 87.25 77.46 80.26
method X-Ray Diffractionresolution 2.50 Å
ligand SO4, ZN enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen., Hishiki A, Hashimoto H, Hanafusa T, Kamei K, Ohashi E, Shimizu T, Ohmori H, Sato M, J Biol Chem. 2009 Apr 17;284(16):10552-60. Epub 2009 Feb 10. PMID:19208623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (2zvl.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (2zvl.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 2ZVL
  • CSU: Contacts of Structural Units for 2ZVL
  • Likely Quarternary Molecular Structure file(s) for 2ZVL
  • Structure Factors (1055 Kb)
  • Retrieve 2ZVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZVL from S2C, [Save to disk]
  • Re-refined 2zvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZVL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zvl_D] [2zvl_A] [2zvl_B] [2zvl_W] [2zvl_Z] [2zvl] [2zvl_E] [2zvl_F] [2zvl_U] [2zvl_C] [2zvl_Y] [2zvl_X] [2zvl_V]
  • SWISS-PROT database: [P12004]
  • Domain organization of [PCNA_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZVL
  • Community annotation for 2ZVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science