2ZVO	Transcription Signaling Protein	date	Nov 12, 2008
title	Nemo Cozi Domain In Complex With Diubiquitin In C2 Space Gro
authors	S.Rahighi, F.Ikeda, M.Kawasaki, M.Akutsu, N.Suzuki, R.Kato, T.Kens T.Uejima, S.Bloor, D.Komander, F.Randow, S.Wakatsuki, I.Dikic
compound		source
Molecule: Ubc Protein Chain: A, G Fragment: Ubiquitin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dl41 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t1
Molecule: Nf-Kappa-B Essential Modulator Chain: B, D Fragment: Cc2-Lz, Cozi Domain Synonym: Nemo, Nf-Kappa-B Essential Modifier, Inhibitor Of Factor Kappa-B Kinase Subunit Gamma, Ikb Kinase Subunit Gam Kappa-B Kinase Gamma, Ikk-Gamma, Ikkg, Ikb Kinase-Associate 1, Ikkap1, Mfip-3; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t1
symmetry	Space Group: C 1 2 1	R_factor 0.237 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.861 98.372 50.616 90.00 101.96 90.00
method	X-Ray Diffraction	resolution	2.90 Å
note	2ZVO is a representative structure
Primary reference	Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation., Rahighi S, Ikeda F, Kawasaki M, Akutsu M, Suzuki N, Kato R, Kensche T, Uejima T, Bloor S, Komander D, Randow F, Wakatsuki S, Dikic I, Cell. 2009 Mar 20;136(6):1098-109. PMID:19303852

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (2zvo.pdb1.gz) 78 Kb CSU: Contacts of Structural Units for 2ZVO Likely Quarternary Molecular Structure file(s) for 2ZVO Structure Factors (222 Kb) Retrieve 2ZVO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZVO from S2C, [Save to disk] Re-refined 2zvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZVO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZVO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZVO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zvo_B] [2zvo_D] [2zvo_G] [2zvo_A] [2zvo] SWISS-PROT database: [O88522] [P62988] Domain organization of [NEMO_MOUSE] [UBIQ_HUMAN] by SWISSPFAM Domain found in 2ZVO: [UBQ ] by SMART

Other resources with information on 2ZVO

Community annotation for 2ZVO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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