2ZXC	Hydrolase	date	Dec 22, 2008
title	Ceramidase Complexed With C2
authors	H.Okano, T.Inoue, N.Okino, Y.Kakuta, H.Matsumura, M.Ito
compound		source
Molecule: Neutral Ceramidase Chain: A, B Synonym: Ncdase, Acylsphingosine Deacylase, N-Acylsphingosi Amidohydrolase; Ec: 3.5.1.23 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.741 65.800 340.339 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	2ED, DMS, FMT, MG, ZN	enzyme	Hydrolase E.C.3.5.1.23 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase., Inoue T, Okino N, Kakuta Y, Hijikata A, Okano H, Goda HM, Tani M, Sueyoshi N, Kambayashi K, Matsumura H, Kai Y, Ito M, J Biol Chem. 2009 Apr 3;284(14):9566-77. Epub 2008 Dec 16. PMID:19088069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk] Biological Unit Coordinates (2zxc.pdb1.gz) 111 Kb Biological Unit Coordinates (2zxc.pdb2.gz) 111 Kb LPC: Ligand-Protein Contacts for 2ZXC CSU: Contacts of Structural Units for 2ZXC Likely Quarternary Molecular Structure file(s) for 2ZXC Structure Factors (1091 Kb) Retrieve 2ZXC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZXC from S2C, [Save to disk] Re-refined 2zxc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZXC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZXC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZXC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zxc_A] [2zxc] [2zxc_B] SWISS-PROT database: [Q9I596] Domain organization of [NCASE_PSEAE] by SWISSPFAM

Other resources with information on 2ZXC

Community annotation for 2ZXC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---