2ZY2 Lyase date Jan 13, 2009
title Dodecameric L-Aspartate Beta-Decarboxylase
authors H.J.Chen, T.P.Ko, C.Y.Lee, N.C.Wang, A.H.J.Wang
compound source
Molecule: L-Aspartate 4-Carboxylyase
Chain: A
Ec: 4.1.1.12
Engineered: Yes
Organism_scientific: Pseudomonas Sp.
Organism_taxid: 206121
Strain: Atcc 19121
Gene: Asdp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: F 4 3 2
R_factor 0.228 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
298.900 298.900 298.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand PLP enzyme Lyase E.C.4.1.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure, Assembly, and Mechanism of a PLP-Dependent Dodecameric l-Aspartate beta-Decarboxylase., Chen HJ, Ko TP, Lee CY, Wang NC, Wang AH, Structure. 2009 Apr 15;17(4):517-29. PMID:19368885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2zy2.pdb1.gz) 992 Kb
  • LPC: Ligand-Protein Contacts for 2ZY2
  • CSU: Contacts of Structural Units for 2ZY2
  • Likely Quarternary Molecular Structure file(s) for 2ZY2
  • Structure Factors (163 Kb)
  • Retrieve 2ZY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZY2 from S2C, [Save to disk]
  • Re-refined 2zy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZY2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZY2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zy2] [2zy2_A]
  • SWISS-PROT database: [Q53IZ1]
  • Domain organization of [Q53IZ1_9PSED] by SWISSPFAM
  • Other resources with information on 2ZY2
  • Community annotation for 2ZY2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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