306D Dna date Jan 03, 1997
title Side-By-Side Binding Of Distamycin Molecules To D(Icitacic)
authors X.Chen, B.Ramakrishnan, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Ipcpiptpapcpipc)-3')
Chain: A
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 41 2 2
R_factor 0.153 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.030 28.030 58.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand DMY, MG enzyme
Primary referenceCrystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC)., Chen X, Ramakrishnan B, Sundaralingam M, J Mol Biol 1997 Apr 18;267(5):1157-70. PMID:9150404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (306d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 306D
  • CSU: Contacts of Structural Units for 306D
  • Likely Quarternary Molecular Structure file(s) for 306D
  • Retrieve 306D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 306D from S2C, [Save to disk]
  • View 306D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 306D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 306D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [306d] [306d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 306D
  • Community annotation for 306D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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