319D Dna date Mar 17, 1997
title Crystal Structures Of D(Ccggg(Br)5cccgg)-Orthogonal Form
authors D.B.Tippin, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Cpcpgpgpgp(Cbr)Pcpcpgpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.150 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.360 44.290 48.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CBR, SPE enzyme
Primary referenceNine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA., Tippin DB, Sundaralingam M, J Mol Biol 1997 Apr 18;267(5):1171-85. PMID:9150405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (319d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 319D
  • CSU: Contacts of Structural Units for 319D
  • Likely Quarternary Molecular Structure file(s) for 319D
  • Structure Factors (22 Kb)
  • Retrieve 319D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 319D from S2C, [Save to disk]
  • Re-refined 319d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 319D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 319D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 319D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [319d_B] [319d] [319d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 319D
  • Community annotation for 319D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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