331D Dna date May 13, 1997
title Crystal Structure Of D(Gcgcgcg) With 5'-Overhang G'S
authors B.Pan, C.Ban, M.Wahl, M.Sundaralingam
compound source
Molecule: Dna (5'-D(Gpcpgpcpgpcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
20.410 29.650 51.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand NCO enzyme
Primary referenceCrystal structure of d(GCGCGCG) with 5'-overhang G residues., Pan B, Ban C, Wahl MC, Sundaralingam M, Biophys J 1997 Sep;73(3):1553-61. PMID:9284322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (331d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 331D
  • CSU: Contacts of Structural Units for 331D
  • Likely Quarternary Molecular Structure file(s) for 331D
  • Retrieve 331D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 331D from S2C, [Save to disk]
    • View 331D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 331D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 331D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [331d] [331d_A] [331d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 331D
  • Community annotation for 331D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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