336D Dna date Jun 24, 1997
title Interaction Between Left-Handed Z-Dna And Polyamine-3 The Cr Structure Of The D(Cg)3 And Thermospermine Complex
authors H.Ohishi, N.Terasoma, I.Nakanishi, G.Van Der Marel, J.H.Van Boom A.H.J.Wang, T.Hakoshima, K.I.Tomita
compound source
Molecule: Dna (5'-D(Cpgpcpgpcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.980 31.510 44.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand MG, TER enzyme
Primary referenceInteraction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex., Ohishi H, Terasoma N, Nakanishi I, van der Marel G, van Boom JH, Rich A, Wang AH, Hakoshima T, Tomita K, FEBS Lett 1996 Dec 2;398(2-3):291-6. PMID:8977125
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (336d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 336D
  • CSU: Contacts of Structural Units for 336D
  • Likely Quarternary Molecular Structure file(s) for 336D
  • Retrieve 336D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 336D from S2C, [Save to disk]
    • View 336D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 336D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 336D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [336d_B] [336d] [336d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 336D
  • Community annotation for 336D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science