338D Dna date Jun 26, 1997
title Structural Parameters From Single-Crystal Structures For Acc Models Of A-Dna
authors B.H.M.Mooers, B.F.Eichman, P.S.Ho
compound source
Molecule: Dna (5'-D(Gp(5cm)Pgpcpgpcpgpc)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.202 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.070 43.070 25.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 5CM enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (338d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 338D
  • CSU: Contacts of Structural Units for 338D
  • Likely Quarternary Molecular Structure file(s) for 338D
  • Structure Factors (19 Kb)
  • Retrieve 338D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 338D from S2C, [Save to disk]
  • Re-refined 338d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 338D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 338D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 338D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [338d] [338d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 338D
  • Community annotation for 338D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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