344D Dna date Aug 04, 1997
title Determination By Mad-Dm Of The Structure Of The Dna Duplex D(Acgtacg(5-Bru))2 At 1.46a And 100k
authors A.R.Todd, A.Adams, H.R.Powell, C.J.Cardin
compound source
Molecule: Dna (5'-D(Apcpgptpapcpgp(Bru))-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.597 43.597 26.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand BRU enzyme
Primary referenceDetermination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K., Todd AK, Adams A, Powell HR, Wilcock DJ, Thorpe JH, Lausi A, Zanini F, Wakelin LP, Cardin CJ, Acta Crystallogr D Biol Crystallogr 1999 Apr;55 ( Pt 4):729-35. PMID:10089302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (344d.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 344D
  • CSU: Contacts of Structural Units for 344D
  • Likely Quarternary Molecular Structure file(s) for 344D
  • Retrieve 344D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 344D from S2C, [Save to disk]
    • View 344D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 344D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 344D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [344d_A] [344d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 344D
  • Community annotation for 344D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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