359D Ribozyme date Oct 27, 1997
title Inhibition Of The Hammerhead Ribozyme Cleavage Reaction By S Specific Binding Of Tb(III)
authors A.L.Feig, W.G.Scott, O.C.Uhlenbeck
compound source
Molecule: Rna Hammerhead Ribozyme
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Rna Hammerhead Ribozyme
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.256 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.540 65.540 138.080 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand TB enzyme
Primary referenceInhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb., Feig AL, Scott WG, Uhlenbeck OC, Science 1998 Jan 2;279(5347):81-4. PMID:9417029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (359d.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 359D
  • CSU: Contacts of Structural Units for 359D
  • Likely Quarternary Molecular Structure file(s) for 359D
  • Structure Factors (53 Kb)
  • Retrieve 359D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 359D from S2C, [Save to disk]
  • Re-refined 359d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 359D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 359D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 359D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [359d_B] [359d] [359d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 359D
  • Community annotation for 359D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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