364D	Rna	date	Dec 08, 1997
title	3.0 A Structure Of Fragment I From E. Coli 5s Rrna
authors	C.C.Correll, B.Freeborn, P.B.Moore, T.A.Steitz
compound		source
Molecule: Rna (5'-R(Upgp)-D((1sc)P)-R(Cpupgpgpcp 3'); Chain: A Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_organelle: Cytosol
Molecule: Rna (5'- R(Cpcpgpapupgpgpupapgpupgpupgpgpgpg Upc) Chain: B Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_organelle: Cytosol Expression_system_plasmid: Pkk5-1 Rrnb 5s Cistron
Molecule: Rna (5'- R(Cpcpcpcpapupgpcpgpapgpapgpupapgpg Pgpapapcpupgpcpcpapgpgpcpapu)-3'); Chain: C Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_organelle: Cytosol Expression_system_plasmid: Pkk5-1 Rrnb 5s Cistron
symmetry	Space Group: P 61 2 2	R_factor 0.272 R_Free 0.324
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.030 59.030 254.070 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	1SC, MG	enzyme
note	364D supersedes 356D
Primary reference	Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain., Correll CC, Freeborn B, Moore PB, Steitz TA, Cell 1997 Nov 28;91(5):705-12. PMID:9393863

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (364d.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 364D CSU: Contacts of Structural Units for 364D Likely Quarternary Molecular Structure file(s) for 364D Retrieve 364D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 364D from S2C, [Save to disk]

View 364D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 364D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 364D, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [364d_B] [364d_A] [364d] [364d_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 364D

Community annotation for 364D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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