372D Dna date Dec 19, 1997
title Structural Variability Of A-Dna In Crystals Of The Octamer D(Pcpcpcpgpcpgpgpg)
authors L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos
compound source
Molecule: Dna (5'-D(Pcpcpcpgpcpgpgpg)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.181 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.770 41.770 25.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceStructural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG), Fernandez LG, Subirana JA, Verdaguer N, Pyshnyi D, Campos L, Malinina L, J Biomol Struct Dyn 1997 Aug;15(1):151-63. PMID:9283988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (372d.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 372D
  • Likely Quarternary Molecular Structure file(s) for 372D
  • Retrieve 372D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 372D from S2C, [Save to disk]
    • View 372D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 372D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 372D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [372d] [372d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 372D
  • Community annotation for 372D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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