383D Dna date Mar 02, 1998
title Hydration And Recognition Of Methylated Cpg Steps In Dna
authors C.Mayer-Jung, D.Moras, Y.Timsit
compound source
Molecule: Dna (5'-D(Cp(5cm)Pgpcp(5cm)Pgpgp(5cm)Pgp
Chain: A, B
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.900 45.300 46.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 5CM, MG enzyme
Primary referenceHydration and recognition of methylated CpG steps in DNA., Mayer-Jung C, Moras D, Timsit Y, EMBO J 1998 May 1;17(9):2709-18. PMID:9564052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (383d.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 383D
  • CSU: Contacts of Structural Units for 383D
  • Likely Quarternary Molecular Structure file(s) for 383D
  • Retrieve 383D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 383D from S2C, [Save to disk]
  • View 383D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 383D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 383D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [383d_A] [383d_B] [383d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 383D
  • Community annotation for 383D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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