390D Dna date Apr 20, 1998
title Structural Variability And New Intermolecular Interactions O Crystals Of D(Pcpgpcpgpcpg)
authors L.Malinina, V.Tereshko, E.Ivanova, J.A.Subirana, V.Zarytova, Y.Ne
compound source
Molecule: Dna (5'-D(Pcpgpcpgpcpg)-3')
Chain: A, B, C
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor 0.188 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.730 52.630 26.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG)., Malinina L, Tereshko V, Ivanova E, Subirana JA, Zarytova V, Nekrasov Y, Biophys J 1998 May;74(5):2482-90. PMID:9591674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (390d.pdb1.gz) 5 Kb
  • Biological Unit Coordinates (390d.pdb2.gz) 4 Kb
  • CSU: Contacts of Structural Units for 390D
  • Likely Quarternary Molecular Structure file(s) for 390D
  • Structure Factors (23 Kb)
  • Retrieve 390D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 390D from S2C, [Save to disk]
  • Re-refined 390d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 390D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 390D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 390D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [390d] [390d_C] [390d_A] [390d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 390D
  • Community annotation for 390D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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