3A03 Gene Regulation date Feb 28, 2009
title Crystal Structure Of Hox11l1 Homeodomain
authors K.Miyazono, K.Nagata, K.Saigo, T.Kojima, M.Tanokura
compound source
Molecule: T-Cell Leukemia Homeobox Protein 2
Chain: A
Fragment: Homeobox, Residues 162-216
Synonym: Homeobox Protein Hox-11l1, Neural Corest Homeobox
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tlx2, Hox11l1, Ncx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.200 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.060 33.170 34.430 90.00 102.12 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless., Miyazono KI, Zhi Y, Takamura Y, Nagata K, Saigo K, Kojima T, Tanokura M, EMBO J. 2010 Apr 13. PMID:20389279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (3a03.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (3a03.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3A03
  • CSU: Contacts of Structural Units for 3A03
  • Structure Factors (163 Kb)
  • Retrieve 3A03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A03 from S2C, [Save to disk]
  • Re-refined 3a03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A03
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A03, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a03] [3a03_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A03: [HOX ] by SMART
  • Other resources with information on 3A03
  • Community annotation for 3A03 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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