3A40	Gene Regulation	date	Jun 25, 2009
title	Crystal Structure Of The Human Vdr Ligand Binding Domain Bou Synthetic Agonist Compound 2alpha-Methyl-Amcr277b(C23r)
authors	Y.Sato, P.Antony, T.Huet, R.Sigueiro, N.Rochel, D.Moras, Structura Proteomics In Europe 2 (Spine-2)
compound		source
Molecule: Vitamin D3 Receptor Chain: X Fragment: Ligand Binding Domain, Unp Residues 118-427 Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 21 21 21	R_factor 0.160 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.969 51.496 131.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	23R, SO4	enzyme
Gene Ontology	Chain Function Process Component X
Primary reference	Structure-Function Relationships and Crystal Structures of the Vitamin D Receptor Bound 2alpha-Methyl-(20S,23S)- and 2alpha-Methyl-(20S,23R)-epoxymethano-1alpha,25-dihydroxyvitamin D(3)., Antony P, Sigueiro R, Huet T, Sato Y, Ramalanjaona N, Rodrigues LC, Mourino A, Moras D, Rochel N, J Med Chem. 2010 Jan 13. PMID:20070104

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (3a40.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 3A40 CSU: Contacts of Structural Units for 3A40 Structure Factors (385 Kb) Retrieve 3A40 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A40 from S2C, [Save to disk] Re-refined 3a40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3A40

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A40, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a40_X] [3a40] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3A40: [HOLI ] by SMART

Other resources with information on 3A40

Community annotation for 3A40 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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