3A45	Hydrolase	date	Jun 30, 2009
title	Crystal Structure Of Mvnei1_2
authors	K.Imamura, S.Wallace, S.Doublie
compound		source
Molecule: Formamidopyrimidine-Dna Glycosylase Chain: A, B Synonym: Fapy-Dna Glycosylase, Dna-(Apurinic Or Apyrimidini Lyase, Ap Lyase, Endonuclease Viii, Mvnei1; Ec: 3.2.2.23 Engineered: Yes		Organism_scientific: Acanthamoeba Polyphaga Mimivirus Organism_common: Apmv Organism_taxid: 212035 Gene: L315 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta(De3)Plys Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 1	R_factor 0.203 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.673 54.417 87.308 107.00 99.86 93.42
method	X-Ray Diffraction	resolution	2.30 Å
ligand	K	enzyme	Hydrolase E.C.3.2.2.23 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural characterization of a viral NEIL1 ortholog unliganded and bound to abasic site-containing DNA., Imamura K, Wallace SS, Doublie S, J Biol Chem. 2009 Jul 22. PMID:19625256

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (3a45.pdb1.gz) 53 Kb Biological Unit Coordinates (3a45.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 3A45 CSU: Contacts of Structural Units for 3A45 Likely Quarternary Molecular Structure file(s) for 3A45 Structure Factors (212 Kb) Retrieve 3A45 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A45 from S2C, [Save to disk] Re-refined 3a45 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A45 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3A45

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A45, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a45] [3a45_A] [3a45_B] SWISS-PROT database: [Q5UQ00] Domain organization of [FPG_MIMIV] by SWISSPFAM Domains found in 3A45: [Fapy_DNA_glyco] [H2TH ] by SMART

Other resources with information on 3A45

Community annotation for 3A45 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---