3A4T Transferase date Jul 14, 2009
title Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin
authors M.Hirano, M.Kuratani, S.Yokoyama, Riken Structural Genomicspro Initiative (Rsgi)
compound source
Molecule: Putative Methyltransferase Mj0026
Chain: A, B
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Methanocaldococcus Jannaschii
Organism_common: Methanococcus Jannaschii
Organism_taxid: 2190
Gene: Mj0026
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.259 40.097 85.951 90.00 110.84 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SFG enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Methanocaldococcus jannaschii Trm4 complexed with sinefungin., Kuratani M, Hirano M, Goto-Ito S, Itoh Y, Hikida Y, Nishimoto M, Sekine S, Bessho Y, Ito T, Grosjean H, Yokoyama S, J Mol Biol. 2010 Aug 20;401(3):323-33. Epub 2010 Jun 30. PMID:20600111
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3a4t.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3a4t.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3A4T
  • CSU: Contacts of Structural Units for 3A4T
  • Structure Factors (381 Kb)
  • Retrieve 3A4T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A4T from S2C, [Save to disk]
  • Re-refined 3a4t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A4T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A4T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A4T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a4t] [3a4t_A] [3a4t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3A4T
  • Community annotation for 3A4T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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