3A70 Hydrolase date Sep 10, 2009
title Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In Complex Diethyl Phosphate
authors C.Angkawidjaja, H.Matsumura, Y.Koga, K.Takano, S.Kanaya
compound source
Molecule: Lipase
Chain: A, C
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Pseudomonas
Organism_taxid: 91465
Strain: Mis38
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc18
symmetry Space Group: P 65 2 2
R_factor 0.170 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.297 104.297 496.182 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand ACT, CA, DEP, NPO enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceX-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids., Angkawidjaja C, Matsumura H, Koga Y, Takano K, Kanaya S, J Mol Biol. 2010 May 10. PMID:20438738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (3a70.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 3A70
  • CSU: Contacts of Structural Units for 3A70
  • Structure Factors (1306 Kb)
  • Retrieve 3A70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A70 from S2C, [Save to disk]
  • Re-refined 3a70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A70
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A70, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a70_C] [3a70] [3a70_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3A70
  • Community annotation for 3A70 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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