3AE9 Oxidoreductase Oxidoreductase Inhibitor date Feb 04, 2010
title Crystal Structure Of Porcine Heart Mitochondrial Complex II N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-Benzami
authors S.Harada, T.Sasaki, M.Shindo, Y.Kido, D.K.Inaoka, J.Omori, A.Osana K.Sakamoto, J.Mao, S.Matsuoka, M.Inoue, T.Honma, A.Tanaka, K.Kita
compound source
Molecule: Succinate Dehydrogenase [Ubiquinone] Flavoprotein Mitochondrial;
Chain: A
Synonym: Flavoprotein Subunit Of Complex II, Fp
Ec: 1.3.5.1
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Heart
Tissue: Muscle

Molecule: Succinate Dehydrogenase [Ubiquinone] Iron-Sulfur Mitochondrial;
Chain: B
Synonym: Iron-Sulfur Subunit Of Complex II, Ip
Ec: 1.3.5.1

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Heart
Tissue: Muscle

Molecule: Succinate Dehydrogenase Cytochrome B560 Subunit, Mitochondrial;
Chain: C
Synonym: Succinate-Ubiquinone Oxidoreductase Cytochrome B L Subunit, Cybl;

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Heart
Tissue: Muscle

Molecule: Succinate Dehydrogenase [Ubiquinone] Cytochrome B Subunit, Mitochondrial;
Chain: D
Fragment: Residues 57-159
Synonym: Succinate-Ubiquinone Oxidoreductase Cytochrome B S Subunit, Cybs, Succinate-Ubiquinone Reductase Membrane Anch Subunit, Qps3, Cii-4, Succinate Dehydrogenase Complex Subun

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Heart
Tissue: Muscle
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.609 84.249 295.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.31 Å
ligand EPH, F3S, FAD, FD8, FES, HEM, MLI, SF4 enzyme Oxidoreductase E.C.1.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A

  • mitochondrial respiratory ch...
  • B
  • electron transfer activity


  • C


    D


    Primary referenceStructural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria., Inaoka DK, Shiba T, Sato D, Balogun EO, Sasaki T, Nagahama M, Oda M, Matsuoka S, Ohmori J, Honma T, Inoue M, Kita K, Harada S, Int J Mol Sci. 2015 Jul 7;16(7):15287-308. doi: 10.3390/ijms160715287. PMID:26198225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (372 Kb) [Save to disk]
  • Biological Unit Coordinates (3ae9.pdb1.gz) 362 Kb
  • LPC: Ligand-Protein Contacts for 3AE9
  • CSU: Contacts of Structural Units for 3AE9
  • Structure Factors (412 Kb)
  • Retrieve 3AE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AE9 from S2C, [Save to disk]
  • Re-refined 3ae9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AE9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AE9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ae9_D] [3ae9_B] [3ae9] [3ae9_A] [3ae9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3AE9
  • Community annotation for 3AE9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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