3AUK Hydrolase date Feb 08, 2011
title Crystal Structure Of A Lipase From Geobacillus Sp. Sbs-4s
authors C.Angkawidjaja, M.Tayyab, N.Rashid, S.Kanaya
compound source
Molecule: Lipase
Chain: A
Ec: 3.1.1.3
Engineered: Yes
 Organism_scientific: Geobacillus
Organism_taxid: 558164
Strain: Sbs-4s
Gene: Lip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.131 71.745 126.262 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand CA, CL, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3auk.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3AUK
  • CSU: Contacts of Structural Units for 3AUK
  • Structure Factors (844 Kb)
  • Retrieve 3AUK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AUK from S2C, [Save to disk]
  • Re-refined 3auk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AUK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3AUK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AUK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3auk_A] [3auk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3AUK
  • Community annotation for 3AUK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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