3AXC Signaling Protein date Apr 01, 2011
title Crystal Structure Of Linear Diubiquitin
authors A.Rohaim, M.Kawasaki, R.Kato, I.Dikic, S.Wakatsuki
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
Other_details: Linear Diubiquitin
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 1
R_factor 0.206 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.261 35.314 35.841 91.79 112.85 112.88
method X-Ray Diffractionresolution 2.19 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • intracellular transport of v...
  • small ribosomal subunit
  • cytosolic small ribosomal su...
    • Primary referenceStructure of a compact conformation of linear diubiquitin., Rohaim A, Kawasaki M, Kato R, Dikic I, Wakatsuki S, Acta Crystallogr D Biol Crystallogr. 2012 Feb;68(Pt 2):102-8. Epub 2012 Jan 13. PMID:22281738
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3axc.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3AXC
  • CSU: Contacts of Structural Units for 3AXC
  • Structure Factors (43 Kb)
  • Retrieve 3AXC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AXC from S2C, [Save to disk]
  • Re-refined 3axc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AXC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3AXC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AXC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3axc] [3axc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3AXC: [UBQ ] by SMART
    • Other resources with information on 3AXC
  • Community annotation for 3AXC at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science