3AXK	Lyase	date	Apr 11, 2011
title	Structure Of Rice Rubisco In Complex With Nadp(H)
authors	H.Matsumura, E.Mizohata, H.Ishida, A.Kogami, T.Ueno, A.Makino, T.I A.Yokota, T.Mae, Y.Kai
compound		source
Molecule: Ribulose Bisphosphate Carboxylase Large Chain Chain: A, B Synonym: Rubisco Large Subunit, D-Ribulose 1,5-Bisphosphate Carboxylaseoxygenase Large Subunit; Ec: 4.1.1.39		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Tissue: Leaves
Molecule: Ribulose Bisphosphate Carboxylase Small Chain, Chloroplastic; Chain: S, T Synonym: Rubisco Small Subunit, D-Ribulose 1,5-Bisphosphate Carboxylaseoxygenase Small Subunit; Ec: 4.1.1.39		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Tissue: Leaves
symmetry	Space Group: I 4	R_factor 0.169 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.246 110.246 199.768 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GOL, KCX, MG, NDP, NME	enzyme	Lyase E.C.4.1.1.39 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of Rice Rubisco and Implications for Activation Induced by Positive Effectors NADPH and 6-Phosphogluconate., Matsumura H, Mizohata E, Ishida H, Kogami A, Ueno T, Makino A, Inoue T, Yokota A, Mae T, Kai Y, J Mol Biol. 2012 May 17. PMID:22609438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk] Biological Unit Coordinates (3axk.pdb1.gz) 794 Kb LPC: Ligand-Protein Contacts for 3AXK CSU: Contacts of Structural Units for 3AXK Structure Factors (1333 Kb) Retrieve 3AXK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3AXK from S2C, [Save to disk] Re-refined 3axk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3AXK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3AXK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3AXK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3axk_B] [3axk_A] [3axk_S] [3axk_T] [3axk] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3AXK: [RuBisCO_small ] by SMART

Other resources with information on 3AXK

Community annotation for 3AXK at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---