3B07	Toxin	date	Jun 06, 2011
title	Crystal Structure Of Octameric Pore Form Of Gamma-Hemolysin Staphylococcus Aureus
authors	K.Yamashita, Y.Kawai, Y.Tanaka, M.Yao, I.Tanaka
compound		source
Molecule: Gamma-Hemolysin Component B Chain: A, C, E, G Synonym: Protomer F, H-Gamma-1, H-Gamma-I Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 158878 Strain: Mu50 Gene: Sav2421 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
Molecule: Gamma-Hemolysin Component A Chain: B, D, F, H Synonym: Protomer S, H-Gamma-2, H-Gamma-II Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 158878 Strain: Mu50 Gene: Sav2419 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
symmetry	Space Group: C 2 2 21	R_factor 0.207 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 206.454 206.141 190.299 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	MPD	enzyme
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D toxin activity
Primary reference	Crystal structure of the octameric pore of staphylococcal gamma-hemolysin reveals the beta-barrel pore formation mechanism by two components., Yamashita K, Kawai Y, Tanaka Y, Hirano N, Kaneko J, Tomita N, Ohta M, Kamio Y, Yao M, Tanaka I, Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17314-9. Epub 2011 Oct 3. PMID:21969538

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk] Biological Unit Coordinates (3b07.pdb1.gz) 368 Kb LPC: Ligand-Protein Contacts for 3B07 CSU: Contacts of Structural Units for 3B07 Structure Factors (2207 Kb) Retrieve 3B07 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B07 from S2C, [Save to disk] Re-refined 3b07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B07, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b07_D] [3b07_A] [3b07_F] [3b07_G] [3b07_B] [3b07] [3b07_H] [3b07_E] [3b07_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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