3B2W	Transferase	date	Oct 19, 2007
title	Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
authors	X.Huang
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Lck Chain: A Fragment: Lck Kinase Domain: Residues 226-502 Synonym: P56-Lck, Lymphocyte Cell-Specific Protein-Tyrosine Lsk, T Cell-Specific Protein-Tyrosine Kinase; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lck Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_collection: Insect Cell
symmetry	Space Group: P 1 21 1	R_factor 0.230 R_Free 0.308
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.180 75.190 47.110 90.00 112.35 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	9NH	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	N-(3-(phenylcarbamoyl)arylpyrimidine)-5-carboxamides as potent and selective inhibitors of Lck: structure, synthesis and SAR., Deak HL, Newcomb JR, Nunes JJ, Boucher C, Cheng AC, DiMauro EF, Epstein LF, Gallant P, Hodous BL, Huang X, Lee JH, Patel VF, Schneider S, Turci SM, Zhu X, Bioorg Med Chem Lett. 2008 Feb 1;18(3):1172-6. Epub 2007 Dec 5. PMID:18083554

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3b2w.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3B2W CSU: Contacts of Structural Units for 3B2W Likely Quarternary Molecular Structure file(s) for 3B2W Retrieve 3B2W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B2W from S2C, [Save to disk]

View 3B2W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B2W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B2W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b2w] [3b2w_A] SWISS-PROT database: [P06239] Domain organization of [LCK_HUMAN] by SWISSPFAM Domain found in 3B2W: [TyrKc ] by SMART

Other resources with information on 3B2W

Community annotation for 3B2W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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