3B5H	Cell Invasion	date	Oct 26, 2007
title	Crystal Structure Of The Extracellular Portion Of Hab18gcd1
authors	X.L.Yu, Z.N.Chen
compound		source
Molecule: Cervical Emmprin Chain: A, B, C, D Fragment: Extracellular Portion, Unp Residues 22-205 Synonym: Hab18gcd147 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bsg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origamib(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a(+)
symmetry	Space Group: P 41 21 2	R_factor 0.243 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 126.481 126.481 169.926 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ACT	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of HAb18G/CD147: implications for immunoglobulin superfamily homophilic adhesion., Yu XL, Hu T, Du JM, Yang XM, Zhang J, Yang B, Shen X, Zhang Z, Zhong WD, Wen N, Ding JP, Jiang H, Zhu P, Chen ZN, J Biol Chem. 2008 Apr 22;. PMID:18430721

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk] Biological Unit Coordinates (3b5h.pdb1.gz) 30 Kb Biological Unit Coordinates (3b5h.pdb2.gz) 30 Kb Biological Unit Coordinates (3b5h.pdb3.gz) 30 Kb Biological Unit Coordinates (3b5h.pdb4.gz) 29 Kb LPC: Ligand-Protein Contacts for 3B5H CSU: Contacts of Structural Units for 3B5H Likely Quarternary Molecular Structure file(s) for 3B5H Structure Factors (612 Kb) Retrieve 3B5H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B5H from S2C, [Save to disk] Re-refined 3b5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B5H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B5H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B5H, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b5h] [3b5h_D] [3b5h_C] [3b5h_B] [3b5h_A] SWISS-PROT database: [P35613] Belongs to the basigin (basigin) family according to TCDB. Domain organization of [BASI_HUMAN] by SWISSPFAM Domain found in 3B5H: [IG ] by SMART

Other resources with information on 3B5H

Community annotation for 3B5H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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