3B5J Transport Protein date Oct 26, 2007
title Crystal Structures Of The S504a Mutant Of An Isolated Abc-At Complex With Tnp-Adp
authors C.Oswald, S.Jenewein, S.H.J.Smits, I.B.Holland, L.Schmitt
compound source
Molecule: Alpha-Hemolysin Translocation Atp-Binding Protein
Chain: A
Fragment: Abc Transporter, Residues Unp 467-707
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Hlyb
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.200 34.600 38.000 90.00 98.40 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 12D enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceWater-mediated protein-fluorophore interactions modulate the affinity of an ABC-ATPase/TNP-ADP complex., Oswald C, Jenewein S, Smits SH, Holland IB, Schmitt L, J Struct Biol. 2007 Nov 21;. PMID:18155559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3b5j.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3B5J
  • CSU: Contacts of Structural Units for 3B5J
  • Likely Quarternary Molecular Structure file(s) for 3B5J
  • Structure Factors (111 Kb)
  • Retrieve 3B5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B5J from S2C, [Save to disk]
  • Re-refined 3b5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B5J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B5J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b5j] [3b5j_A]
  • SWISS-PROT database: [P08716]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [HLYBP_ECOLX] by SWISSPFAM
  • Domain found in 3B5J: [AAA ] by SMART
    • Other resources with information on 3B5J
  • Community annotation for 3B5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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