3B6N	Lyase	date	Oct 29, 2007
title	Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosp Synthase Pv003920 From Plasmodium Vivax
authors	A.K.Wernimont, J.Lew, I.Kozieradzki, Y.H.Lin, X.Sun, C.Khuu, Y.Zha M.Schapira, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, A.Bochkarev J.D.Artz, T.Xiao, Structural Genomics Consortium (Sgc)
compound		source
Molecule: 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synt Chain: A Fragment: Residues 102-287 Ec: 4.6.1.12 Engineered: Yes		Organism_scientific: Plasmodium Vivax Sai-1 Organism_taxid: 126793 Strain: Salvador I Gene: Pv003920, Pvx_003920 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: P15-Mhl-Lic
symmetry	Space Group: P 21 3	R_factor 0.204 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.661 79.661 79.661 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.26 Å
ligand	ZN	enzyme	Lyase E.C.4.6.1.12 BRENDA
Gene	PVX
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (3b6n.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 3B6N CSU: Contacts of Structural Units for 3B6N Likely Quarternary Molecular Structure file(s) for 3B6N Structure Factors (120 Kb) Retrieve 3B6N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B6N from S2C, [Save to disk] Re-refined 3b6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B6N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B6N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B6N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b6n] [3b6n_A] SWISS-PROT database: [A5KBP6] Domain organization of [A5KBP6_PLAVI] by SWISSPFAM

Other resources with information on 3B6N

Community annotation for 3B6N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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