3B77	Crystal structure of a ph domain containing bacterial protein (exig_2160) from exiguobacterium sibiricum 255-15 at 2.42 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.42
ligand	MSE	enzyme
Gene	EXIGDRAFT ; ZP
Primary reference	Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain., Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, J Mol Biol. 2010 Feb 12;396(1):31-46. Epub 2009 Nov 10. PMID:19913036

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk] Biological Unit Coordinates (3b77.pdb1.gz) 367 Kb Biological Unit Coordinates (3b77.pdb2.gz) 357 Kb LPC: Ligand-Protein Contacts for 3B77 CSU: Contacts of Structural Units for 3B77 Structure Factors (8611 Kb) Retrieve 3B77 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B77 from S2C, [Save to disk] Re-refined 3b77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B77 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B77

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B77, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b77_E] [3b77_C] [3b77_D] [3b77_B] [3b77_F] [3b77] [3b77_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3B77

Community annotation for 3B77 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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