3B78 Biosynthetic Protein Transferase date Oct 30, 2007
title Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
authors R.Jorgensen, A.R.Merrill
compound source
Molecule: Elongation Factor 2
Chain: A, C, E
Synonym: Ef-2, Translation Elongation Factor 2, Eukaryotic Factor 2, Eef2, Ribosomal Translocase;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Exotoxin A
Chain: B, D, F
Fragment: Catalytic Domain
Synonym: Nad-Dependent Adp-Ribosyltransferase
Ec: 2.4.2.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Eta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bb101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pph1
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
327.136 68.128 190.577 90.00 102.99 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DDE, NAD enzyme Transferase E.C.2.4.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceThe nature and character of the transition state for the ADP-ribosyltransferase reaction., Jorgensen R, Wang Y, Visschedyk D, Merrill AR, EMBO Rep. 2008 Aug;9(8):802-9. Epub 2008 Jun 27. PMID:18583986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1037 Kb) [Save to disk]
  • Biological Unit Coordinates (3b78.pdb1.gz) 336 Kb
  • Biological Unit Coordinates (3b78.pdb2.gz) 339 Kb
  • Biological Unit Coordinates (3b78.pdb3.gz) 342 Kb
  • LPC: Ligand-Protein Contacts for 3B78
  • CSU: Contacts of Structural Units for 3B78
  • Likely Quarternary Molecular Structure file(s) for 3B78
  • Structure Factors (1138 Kb)
  • Retrieve 3B78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B78 from S2C, [Save to disk]
  • Re-refined 3b78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B78
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B78, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b78_D] [3b78_E] [3b78_A] [3b78_B] [3b78_C] [3b78] [3b78_F]
  • SWISS-PROT database: [P32324] [P11439]
  • Belongs to the pseudomonas exotoxin a (p-exoa) family according to TCDB.
  • Domain organization of [EF2_YEAST] [TOXA_PSEAE] by SWISSPFAM
  • Domains found in 3B78: [EFG_C] [EFG_IV ] by SMART
  • Other resources with information on 3B78
  • Community annotation for 3B78 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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