3B7H Structural Protein date Oct 30, 2007
title Crystal Structure Of The Prophage Lp1 Protein 11
authors R.Zhang, M.Zhou, L.Keigher, A.Joachimiak, Midwest Center For Str Genomics (Mcsg)
compound source
Molecule: Prophage Lp1 Protein 11
Chain: A
Engineered: Yes
Organism_scientific: Lactobacillus Plantarum Wcfs1
Organism_taxid: 220668
Strain: Wcfs1, Ncimb 8826
Atcc: Baa-793
Gene: Lp_0634
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: P 21 21 2
R_factor 0.196 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.951 65.650 27.121 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
note 3B7H is a representative structure
Gene LP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3b7h.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 3B7H
  • Likely Quarternary Molecular Structure file(s) for 3B7H
  • Structure Factors (38 Kb)
  • Retrieve 3B7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B7H from S2C, [Save to disk]
  • Re-refined 3b7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B7H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b7h_A] [3b7h]
  • SWISS-PROT database: [Q88YV7]
  • Domain organization of [Q88YV7_LACPL] by SWISSPFAM
  • Domain found in 3B7H: [HTH_XRE ] by SMART
  • Other resources with information on 3B7H
  • Community annotation for 3B7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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