3B8K	Transferase	date	Nov 01, 2007
title	Structure Of The Truncated Human Dihydrolipoyl Acetyltransfe
authors	X.Yu, Y.Hiromasa, H.Tsen, J.K.Stoops, T.E.Roche, Z.H.Zhou
compound		source
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase Chain: A Fragment: C-Terminal Catalytic Domain Synonym: Pyruvate Dehydrogenase Complex E2 Subunit; Pdce2 Dihydrolipoamide S- Acetyltransferase Component Of Pyruvate Dehydrogenase Complex; Pdc-E2; 70 Kda Mitochondrial Autoant Primary Biliary Cirrhosis; Pbc; M2 Antigen Complex 70 Kda S Ec: 2.3.1.12 Engineered: Yes Other_details: Component Of Pyruvate Dehydrogenase Complex, Mitochondrial		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dlat, Dlta Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	8.80 Å
ligand		enzyme	Transferase E.C.2.3.1.12 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of the human pyruvate dehydrogenase complex cores: a highly conserved catalytic center with flexible N-terminal domains., Yu X, Hiromasa Y, Tsen H, Stoops JK, Roche TE, Zhou ZH, Structure. 2008 Jan;16(1):104-14. PMID:18184588

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (3b8k.pdb1.gz) 31 Kb CSU: Contacts of Structural Units for 3B8K Likely Quarternary Molecular Structure file(s) for 3B8K Retrieve 3B8K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B8K from S2C, [Save to disk]

View 3B8K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B8K

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B8K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b8k] [3b8k_A] SWISS-PROT database: [P10515] Domain organization of [ODP2_HUMAN] by SWISSPFAM

Other resources with information on 3B8K

Community annotation for 3B8K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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