3B8N Biosynthetic Protein date Nov 01, 2007
title Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
authors A.Tocilj, A.Matte, M.Cygler
compound source
Molecule: Ferric Enterobactin (Enterochelin) Transport
Chain: A, B, C, D, E, F, G, H, I
Fragment: Residues 65-331
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83334
Strain: O157:H7
Gene: Fepe
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 32 2 1
R_factor 0.254 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.670 160.670 276.938 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
Primary referenceBacterial polysaccharide co-polymerases share a common framework for control of polymer length., Tocilj A, Munger C, Proteau A, Morona R, Purins L, Ajamian E, Wagner J, Papadopoulos M, Van Den Bosch L, Rubinstein JL, Fethiere J, Matte A, Cygler M, Nat Struct Mol Biol. 2008 Feb;15(2):130-8. Epub 2008 Jan 20. PMID:18204465
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (3b8n.pdb1.gz) 339 Kb
  • CSU: Contacts of Structural Units for 3B8N
  • Likely Quarternary Molecular Structure file(s) for 3B8N
  • Structure Factors (648 Kb)
  • Retrieve 3B8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B8N from S2C, [Save to disk]
  • Re-refined 3b8n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B8N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B8N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b8n_A] [3b8n_C] [3b8n_E] [3b8n_I] [3b8n_H] [3b8n_F] [3b8n_G] [3b8n_B] [3b8n_D] [3b8n]
  • SWISS-PROT database: [Q8XBV8]
  • Domain organization of [Q8XBV8_ECO57] by SWISSPFAM
  • Other resources with information on 3B8N
  • Community annotation for 3B8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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