3B9J Oxidoreductase date Nov 05, 2007
title Structure Of Xanthine Oxidase With 2-Hydroxy-6-Methylpurine
authors J.M.Pauff, J.Zhang, C.E.Bell, R.Hille
compound source
Molecule: Xanthine Oxidase
Chain: A, I
Fragment: Residues 1-219
Synonym: Xo; Xanthine Oxidoreductase
Ec: 1.17.3.2
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Xanthine Oxidase
Chain: B, J
Fragment: Residues 220-569
Synonym: Xo; Xanthine Oxidoreductase
Ec: 1.17.3.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Xanthine Oxidase
Chain: C, K
Fragment: Residues 570-1332
Synonym: Xo; Xanthine Oxidoreductase
Ec: 1.17.3.2

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.187 73.794 146.498 90.00 98.87 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 290, CA, FAD, FES, MOS, MTE enzyme Oxidoreductase E.C.1.17.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, I


C, K


J, B


Primary referenceSubstrate orientation in xanthine oxidase: crystal structure of enzyme in reaction with 2-hydroxy-6-methylpurine., Pauff JM, Zhang J, Bell CE, Hille R, J Biol Chem. 2008 Feb 22;283(8):4818-24. Epub 2007 Dec 6. PMID:18063585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (399 Kb) [Save to disk]
  • Biological Unit Coordinates (3b9j.pdb1.gz) 199 Kb
  • Biological Unit Coordinates (3b9j.pdb2.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 3B9J
  • CSU: Contacts of Structural Units for 3B9J
  • Likely Quarternary Molecular Structure file(s) for 3B9J
  • Structure Factors (1016 Kb)
  • Retrieve 3B9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B9J from S2C, [Save to disk]
  • Re-refined 3b9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B9J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B9J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b9j_A] [3b9j] [3b9j_C] [3b9j_K] [3b9j_I] [3b9j_B] [3b9j_J]
  • SWISS-PROT database: [P80457]
  • Domain organization of [XDH_BOVIN] by SWISSPFAM
  • Domains found in 3B9J: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 3B9J
  • Community annotation for 3B9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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