3B9Y Transport Protein date Nov 07, 2007
title Crystal Structure Of The Nitrosomonas Europaea Rh Protein
authors X.Li, S.Jayachandran, H.H.T.Nguyen, M.K.Chan
compound source
Molecule: Ammonium Transporter Family Rh-Like Protein
Chain: A
Fragment: Residues 31-418
Engineered: Yes
 Organism_scientific: Nitrosomonas Europaea Atcc 19718
Organism_taxid: 228410
Strain: Ifo 14298
Gene: Rh50, Ne0448
Expression_system: Methylococcus Capsulatus
Expression_system_taxid: 414
symmetry Space Group: H 3
R_factor 0.160 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.438 100.438 143.875 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand BOG, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ammonium transmembrane trans...


    • Primary referenceStructure of the Nitrosomonas europaea Rh protein., Li X, Jayachandran S, Nguyen HH, Chan MK, Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19279-84. Epub 2007 Nov 26. PMID:18040042
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3b9y.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 3B9Y
  • CSU: Contacts of Structural Units for 3B9Y
  • Likely Quarternary Molecular Structure file(s) for 3B9Y
  • Structure Factors (370 Kb)
  • Retrieve 3B9Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B9Y from S2C, [Save to disk]
  • Re-refined 3b9y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B9Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B9Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B9Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b9y] [3b9y_A]
  • SWISS-PROT database: [Q82X47]
  • Belongs to the ammonium transporter channel (amt) family according to TCDB.
  • Domain organization of [Q82X47_NITEU] by SWISSPFAM
    • Other resources with information on 3B9Y
  • Community annotation for 3B9Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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