3BAE Immune System date Nov 07, 2007
title Crystal Structure Of Fab Wo2 Bound To The N Terminal Domain Beta Peptide (1-28)
authors L.A.Miles, K.S.Wun, G.A.Crespi, M.W.Parker
compound source
Molecule: Wo2 Igg2a Fab Fragment Light Chain Kappa
Chain: L
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hybridoma

Molecule: Wo2 Igg2a Fab Fragment Heavy Chain
Chain: H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hybridoma

Molecule: Amyloid Beta Peptide
Chain: A
Engineered: Yes

Synthetic: Yes
Other_details: A-Beta 1-28 Was Prepared Synthetically
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.658 66.365 115.337 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.59 Å
Gene
Ontology
ChainFunctionProcessComponent
A


L


Primary referenceAmyloid-beta-anti-amyloid-beta complex structure reveals an extended conformation in the immunodominant B-cell epitope., Miles LA, Wun KS, Crespi GA, Fodero-Tavoletti MT, Galatis D, Bagley CJ, Beyreuther K, Masters CL, Cappai R, McKinstry WJ, Barnham KJ, Parker MW, J Mol Biol. 2008 Mar 14;377(1):181-92. Epub 2008 Jan 30. PMID:18237744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3bae.pdb1.gz) 77 Kb
  • CSU: Contacts of Structural Units for 3BAE
  • Likely Quarternary Molecular Structure file(s) for 3BAE
  • Structure Factors (801 Kb)
  • Retrieve 3BAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BAE from S2C, [Save to disk]
  • Re-refined 3bae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BAE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bae_L] [3bae] [3bae_A] [3bae_H]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 3BAE: [IG_like] [IGv ] by SMART
  • Other resources with information on 3BAE
  • Community annotation for 3BAE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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