3BB0 Oxidoreductase date Nov 09, 2007
title Crystal Structure Of A Trapped Phosphate-Intermediate In Van Apochloroperoxidase Catalyzing A Dephosphorylation Reaction
authors A.Messerschmidt, S.Macedo-Ribeiro
compound source
Molecule: Vanadium Chloroperoxidase
Chain: A
Synonym: Vcpo, Vanadium Chloride Peroxidase
Ec: 1.11.1.10
Engineered: Yes
Organism_scientific: Curvularia Inaequalis
Organism_taxid: 38902
Gene: Cpo
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj1991
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptnt14
symmetry Space Group: H 3
R_factor 0.173 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.060 128.060 103.310 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand CSO, PO3, SO4 enzyme Oxidoreductase E.C.1.11.1.10 BRENDA
note 3BB0 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity
  • chloride peroxidase activity...


  • Primary referenceCrystal structure of a trapped phosphate intermediate in vanadium apochloroperoxidase catalyzing a dephosphorylation reaction., Macedo-Ribeiro S, Renirie R, Wever R, Messerschmidt A, Biochemistry. 2008 Jan 22;47(3):929-34. Epub 2007 Dec 29. PMID:18163651
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3bb0.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3BB0
  • CSU: Contacts of Structural Units for 3BB0
  • Likely Quarternary Molecular Structure file(s) for 3BB0
  • Structure Factors (776 Kb)
  • Retrieve 3BB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BB0 from S2C, [Save to disk]
  • Re-refined 3bb0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BB0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BB0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bb0] [3bb0_A]
  • SWISS-PROT database: [P49053]
  • Domain organization of [PRXC_CURIN] by SWISSPFAM
  • Other resources with information on 3BB0
  • Community annotation for 3BB0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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