3BD1 Transcription date Nov 13, 2007
title Structure Of The Cro Protein From Putative Prophage Element Xylella Fastidiosa Strain Ann-1
authors B.M.Hall, S.A.Roberts, W.R.Montfort, M.H.Cordes
compound source
Molecule: Cro Protein
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Xylella Fastidiosa
Organism_taxid: 155920
Strain: Ann-1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 32
R_factor 0.147 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.970 66.970 54.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL, GOL, SO4 enzyme
note 3BD1 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceTransitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds., Roessler CG, Hall BM, Anderson WJ, Ingram WM, Roberts SA, Montfort WR, Cordes MH, Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2343-8. Epub 2008 Jan 28. PMID:18227506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3bd1.pdb1.gz) 133 Kb
  • Biological Unit Coordinates (3bd1.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3BD1
  • CSU: Contacts of Structural Units for 3BD1
  • Likely Quarternary Molecular Structure file(s) for 3BD1
  • Structure Factors (352 Kb)
  • Retrieve 3BD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BD1 from S2C, [Save to disk]
  • Re-refined 3bd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BD1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BD1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b3bd1, region D:179-412 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bd1] [3bd1_A] [3bd1_C] [3bd1_B]
  • SWISS-PROT database: [Q3R0L1]
  • Domain organization of [Q3R0L1_XYLFA] by SWISSPFAM
    • Other resources with information on 3BD1
  • Community annotation for 3BD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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