3BDF	Hydrolase	date	Nov 14, 2007
title	Crystal Structure Of Metal-Free E. Coli Alkaline Phosphatase
authors	J.C.Grigg, M.E.Murphy
compound		source
Molecule: Alkaline Phosphatase Chain: A, B Synonym: Apase Ec: 3.1.3.1 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Strain: K12 Gene: Phoa Expression_system: Escherichia Coli Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
symmetry	Space Group: P 1 21 1	R_factor 0.162 R_Free 0.184
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.503 103.634 88.550 90.00 105.80 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	SO4	enzyme	Hydrolase E.C.3.1.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, B oxidoreductase activity, act... hydrogenase (acceptor) activ...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (3bdf.pdb1.gz) 153 Kb LPC: Ligand-Protein Contacts for 3BDF CSU: Contacts of Structural Units for 3BDF Likely Quarternary Molecular Structure file(s) for 3BDF Structure Factors (1501 Kb) Retrieve 3BDF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BDF from S2C, [Save to disk] Re-refined 3bdf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BDF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BDF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BDF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bdf_A] [3bdf_B] [3bdf] SWISS-PROT database: [P00634] Domain organization of [PPB_ECOLI] by SWISSPFAM Domain found in 3BDF: [alkPPc ] by SMART

Other resources with information on 3BDF

Community annotation for 3BDF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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