3BDU Lipoprotein date Nov 15, 2007
title Crystal Structure Of Protein Q6d8g1 At The Resolution 1.9 A. Structural Genomics Consortium Target Ewr22a.
authors A.P.Kuzin, M.Su, J.Seetharaman, D.Wang, Y.Fang, K.Cunningham, L.Ow R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F. L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Putative Lipoprotein
Chain: A, B, C, D, E, F, G
Fragment: Residues 21-73
Engineered: Yes
 Organism_scientific: Pectobacterium Atrosepticum Scri1043
Organism_taxid: 218491
Strain: Scri 1043
Atcc: Baa-672
Gene: Eca1013
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.974 79.077 48.472 90.00 96.30 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3bdu.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3BDU
  • CSU: Contacts of Structural Units for 3BDU
  • Likely Quarternary Molecular Structure file(s) for 3BDU
  • Structure Factors (753 Kb)
  • Retrieve 3BDU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BDU from S2C, [Save to disk]
  • Re-refined 3bdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BDU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BDU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BDU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bdu_F] [3bdu_E] [3bdu_G] [3bdu_D] [3bdu_C] [3bdu_A] [3bdu] [3bdu_B]
  • SWISS-PROT database: [Q6D8G1]
  • Domain organization of [Q6D8G1_ERWCT] by SWISSPFAM
    • Other resources with information on 3BDU
  • Community annotation for 3BDU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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