3BI0 Hydrolase date Nov 29, 2007
title X-Ray Structure Of Human Glutamate Carboxypeptidase II (Gcpi Complex With A Transition State Analog Of Glu-Glu
authors J.Lubkowski, C.Barinka
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Fragment: Extracellular Domain Residues 44-750
Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Mgcp, N- Acetylated-Alpha-Linked Acidic D I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidas Folylpoly-Gamma- Glutamate Carboxypeptidase, Fgcp, Folate H 1, Prostate- Specific Membrane Antigen, Psma, Psm;
Ec: 3.4.17.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: Schneider'S S2 Cells
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.183 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.405 130.797 159.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand BIX, BMA, CA, CL, MAN, NAG, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of interactions between human glutamate carboxypeptidase II and its substrate analogs., Barinka C, Hlouchova K, Rovenska M, Majer P, Dauter M, Hin N, Ko YS, Tsukamoto T, Slusher BS, Konvalinka J, Lubkowski J, J Mol Biol. 2008 Mar 7;376(5):1438-50. Epub 2008 Jan 5. PMID:18234225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (3bi0.pdb1.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 3BI0
  • CSU: Contacts of Structural Units for 3BI0
  • Likely Quarternary Molecular Structure file(s) for 3BI0
  • Structure Factors (664 Kb)
  • Retrieve 3BI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BI0 from S2C, [Save to disk]
  • Re-refined 3bi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BI0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BI0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bi0_A] [3bi0]
  • SWISS-PROT database: [Q04609]
  • Domain organization of [FOLH1_HUMAN] by SWISSPFAM
  • Other resources with information on 3BI0
  • Community annotation for 3BI0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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