3BID Structural Genomics, Unknown Function date Nov 30, 2007
title Crystal Structure Of The Nmb1088 Protein From Neisseria Meni Northeast Structural Genomics Consortium Target Mr91
authors F.Forouhar, H.Neely, J.Seetharaman, L.Mao, Y.Fang, R.Xiao, L.A.Owe M.Maglaqui, K.Cunningham, M.C.Baran, T.B.Acton, G.T.Montelione, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Upf0339 Protein Nmb1088
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Organism_scientific: Neisseria Meningitidis Mc58
Organism_taxid: 122586
Strain: Mc58 Serogroup B
Gene: Nmb1088, 903505
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 1
R_factor 0.241 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.743 60.040 64.370 89.39 90.81 103.97
method X-Ray Diffractionresolution 2.70 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3bid.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3bid.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (3bid.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (3bid.pdb4.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3BID
  • CSU: Contacts of Structural Units for 3BID
  • Likely Quarternary Molecular Structure file(s) for 3BID
  • Structure Factors (429 Kb)
  • Retrieve 3BID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BID from S2C, [Save to disk]
  • Re-refined 3bid structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BID, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bid_B] [3bid_D] [3bid_F] [3bid_H] [3bid] [3bid_G] [3bid_E] [3bid_A] [3bid_C]
  • SWISS-PROT database: [Q7DDI1]
  • Domain organization of [Y1088_NEIMB] by SWISSPFAM
  • Other resources with information on 3BID
  • Community annotation for 3BID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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