3BK8 Oxidoreductase date Dec 06, 2007
title Urate Oxidase Aza-Xanthine Complex In Cyanide
authors L.Gabison, T.Prange, N.Colloc'H, M.El Hajji, B.Castro, M.Chiadmi
compound source
Molecule: Uricase
Chain: A
Synonym: Urate Oxidase
Ec: 1.7.3.3
Engineered: Yes
Organism_scientific: Aspergillus Flavus
Organism_taxid: 5059
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932
symmetry Space Group: I 2 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.718 95.105 103.957 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand AZA, NA enzyme Oxidoreductase E.C.1.7.3.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: mechanistic implications., Gabison L, Prange T, Colloc'h N, El Hajji M, Castro B, Chiadmi M, BMC Struct Biol. 2008 Jul 20;8:32. PMID:18638417
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3bk8.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 3BK8
  • CSU: Contacts of Structural Units for 3BK8
  • Likely Quarternary Molecular Structure file(s) for 3BK8
  • Retrieve 3BK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BK8 from S2C, [Save to disk]
  • View 3BK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BK8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BK8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bk8_A] [3bk8]
  • SWISS-PROT database: [Q00511]
  • Domain organization of [URIC_ASPFL] by SWISSPFAM
  • Other resources with information on 3BK8
  • Community annotation for 3BK8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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