3BLT Hydrolase date Dec 11, 2007
title Crystal Structures Of Yoph Complexed With Pvsn And Pvs, Inhi Yoph Which Co-Valent Bind To Cys Of Active Site
authors S.Liu, Z.Y.Zhang
compound source
Molecule: Tyrosine-Protein Phosphatase Yoph
Chain: A
Fragment: Yoph Catalytic Domain
Synonym: Virulence Protein
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Yersinia Enterocolitica
Organism_taxid: 630
Gene: Yoph, Yop51
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.237 55.609 97.545 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PSY enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAryl Vinyl Sulfonates and Sulfones as Active Site-Directed and Mechanism-Based Probes for Protein Tyrosine Phosphatases., Liu S, Zhou B, Yang H, He Y, Jiang ZX, Kumar S, Wu L, Zhang ZY, J Am Chem Soc. 2008 Jun 4;. PMID:18528979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3blt.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3BLT
  • CSU: Contacts of Structural Units for 3BLT
  • Likely Quarternary Molecular Structure file(s) for 3BLT
  • Retrieve 3BLT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BLT from S2C, [Save to disk]
  • View 3BLT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BLT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BLT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3blt_A] [3blt]
  • SWISS-PROT database: [P15273]
  • Domain organization of [YOPH_YEREN] by SWISSPFAM
  • Domain found in 3BLT: [PTPc ] by SMART
  • Other resources with information on 3BLT
  • Community annotation for 3BLT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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