3BN6 Blood Clotting, Cell Adhesion date Dec 13, 2007
title Crystal Structure Of The C2 Domain Of Bovine Lactadherin At Angstrom Resolution
authors C.Shao, V.A.Novakovic, J.F.Head, B.A.Seaton, G.E.Gilbert
compound source
Molecule: Lactadherin
Chain: A
Fragment: F58 Type C 2, C2, Residues 270-427
Synonym: Milk Fat Globule-Egf Factor 8, Mfg-E8, Mgp5753, P Glycoprotein, Mfgm, Sperm Surface Protein Sp47, Bp47, Compo 1516;
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Mfge8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.909 56.033 79.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.67 Å
Primary referenceCrystal structure of lactadherin C2 domain at 1.7A resolution with mutational and computational analyses of its membrane-binding motif., Shao C, Novakovic VA, Head JF, Seaton BA, Gilbert GE, J Biol Chem. 2008 Mar 14;283(11):7230-41. Epub 2007 Dec 26. PMID:18160406
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3bn6.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 3BN6
  • Likely Quarternary Molecular Structure file(s) for 3BN6
  • Structure Factors (255 Kb)
  • Retrieve 3BN6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BN6 from S2C, [Save to disk]
  • Re-refined 3bn6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BN6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BN6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BN6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bn6] [3bn6_A]
  • SWISS-PROT database: [Q95114]
  • Domain organization of [MFGM_BOVIN] by SWISSPFAM
  • Domain found in 3BN6: [FA58C ] by SMART
  • Other resources with information on 3BN6
  • Community annotation for 3BN6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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