3BOC Lyase date Dec 17, 2007
title Carbonic Anhydrase From Marine Diatom Thalassiosira Weissflo Bound Domain 2 (Cdca1-R2)
authors Y.Xu, L.Feng, P.D.Jeffrey, Y.Shi, F.M.M.Morel
compound source
Molecule: Cadmium-Specific Carbonic Anhydrase
Chain: A
Fragment: Domain 2, Cdca1-R2
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Thalassiosira Weissflogii
Organism_taxid: 67004
Gene: Cdca1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.210 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.814 77.909 37.705 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Primary referenceStructure and metal exchange in the cadmium carbonic anhydrase of marine diatoms., Xu Y, Feng L, Jeffrey PD, Shi Y, Morel FM, Nature. 2008 Mar 6;452(7183):56-61. PMID:18322527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3boc.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3BOC
  • CSU: Contacts of Structural Units for 3BOC
  • Likely Quarternary Molecular Structure file(s) for 3BOC
  • Structure Factors (195 Kb)
  • Retrieve 3BOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BOC from S2C, [Save to disk]
  • Re-refined 3boc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BOC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BOC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3boc] [3boc_A]
  • SWISS-PROT database: [Q50EL4]
  • Domain organization of [Q50EL4_THAWE] by SWISSPFAM
  • Other resources with information on 3BOC
  • Community annotation for 3BOC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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