3BOS	Crystal structure of a putative dna replication regulator HDA (SAMA_1916) from Shewanella amazonensis sb2b at 1.75 A resolution	date
authors	JCSG, Joint.Center.for.Structural.Genomics.
compound		source
symmetry		R_factor R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.75
ligand	CDP, CL, EDO, MG, MSE, NA, SCN	enzyme
Gene	SAMA ; YP
Gene Ontology	Chain Function Process Component A, B
Primary reference	A structural basis for the regulatory inactivation of DnaA., Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, J Mol Biol. 2009 Jan 16;385(2):368-80. Epub 2008 Oct 30. PMID:19000695

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (3bos.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 3BOS CSU: Contacts of Structural Units for 3BOS Likely Quarternary Molecular Structure file(s) for 3BOS Structure Factors (5225 Kb) Retrieve 3BOS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BOS from S2C, [Save to disk] Re-refined 3bos structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BOS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BOS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BOS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bos_A] [3bos_B] [3bos] SWISS-PROT database: [A1S6W5] Domain organization of [A1S6W5_SHEAM] by SWISSPFAM

Other resources with information on 3BOS

Community annotation for 3BOS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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